Genomic Analysis Tools for Single cohort:

Gene Cloud : Generate word cloud plot for mutated genes in a virtual cohort.
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Parameters for Plotting


Onco-plot : Plot a sample-level overview of genomic alterations in top candidate genes identified in a defined cohort.
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Parameters for Plotting


Onco-strip : Plot a sample-level overveiw of genomic alterations in given genes of interests.
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Parameters for Plotting


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TiTv Plot : Boxplots showing proportion of transitions and transversions, overall distribution of six different conversions and fraction of conversions in each sample.


VAF Plot : Boxplots showing Variant Allele Frequencies (VAF) for top 10 genes or a given gene list of interest.
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Parameters for Plotting


Lollipop Plot : This tool allows users to draw a lollipop plot -- a hybrid between a scatter plot and a barplot, which shows mutation spots on protein structure.
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Parameters for Plotting


Rainfall Plot : Rainfall plots showing hyper mutated genomic regions by plotting inter variant distance on a linear genomic scale.
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Parameters for Plotting


Mutation Signature Analysis : Generate a plot showing contribution of known mutational processes in a virtual cohort.
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Parameters for Plotting


Drug-Gene Interaction : Check for drug-gene interactions and gene druggability information compiled from Drug-Gene Interaction database and visualize potential druggable gene categories as a boxplot.
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Parameters for Plotting


Mutual Exclusivity :Generate plots showing mutually exclusive or co-occurring set of genes detected by performing pair-wise Fisher's Exact test.
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Parameters for Plotting


Driver Gene Detection : Scatter plots showing identified cancer driver genes based on positional clustering from a virtual cohort.
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Parameters for Plotting