PINA: Protein Interaction Network Analysis platform
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Network Construction
Query a protein
Query a set of proteins
Query a list of interactions
Query two sets of proteins
Multiple sets of proteins
Web service
Interactome Modules
Search modules
Identify enriched modules
Network Filter
Filter (Annotation)
Filter (GO similarity)
Network Analysis
Network function
Network topology
Topologically important proteins
Common interacting proteins
User Community
Shared networks
Shared comments
User Space
My networks
My comments
Network Operation
Filter the network based on the semantic similarities between annotated GO terms of interacting proteins
Select a network:
-- You need have a network before analysis --
Networks from unsaved queries and saved in User Space. If you want to use shared networks, please open it first then you will find it here.
Select Ontology:
All
Biological Process
Cellular Component
Molecular Function
Combine method:
Max
Average
Rcmax
Strategy of combining similarity score of multiple GO terms of one protein.
Detail
Metric:
Lin
Resnik
Jiang and Conrath
Rel
Method to caculate semantic similarity mesure.
Detail
Cutoff:
Range: 0-1.0 for the methods lin, rel, jiang; 0 - infinity for the method resnik