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Toolbox Menu Correlation analysis PCA analysis t-SNE analysis Clustering analysis

mRNA Analysis Tools for Single Cohort

Correlation analysis : This tool performs correlation analysis and generate a scatter plot for 2 given genes.

Help

Select a cohort

Select a cohort for analysis

Options for plotting

Gene A

Gene B

Correaltion method

Width

Height

Output RData file

This analysis task includes samples (sample IDs) with the required molecular and/or clinical data from the .

You can download a source file of RData format here.

The analysis parameters and result files are also available in the Analysis History for future visit.

PCA analysis : This tool performs principal component analysis (PCA), a dimensionality reduction and visualization method, and generate a 2D plot positioning each sample with respect to the first two principal components. It could help to find patterns without reference to prior knowledge, and helps to spot outlier samples.

Help

Select a cohort

Select a cohort for analysis

Options for plotting

Genes

Label group

Width

Height

Ellipse

Output RData file

This analysis task includes samples (sample IDs) with the required molecular and/or clinical data from the .

You can download a source file of RData format here.

The analysis parameters and result files are also available in the Analysis History for future visit.

t-SNE analysis : This tool performs T-distributed Stochastic Neighbor Embedding (t-SNE) for visualization, another popular dimensionality reduction and visualization method.

Help

Select a cohort

Select a cohort for analysis (Required)

Options for plotting

Genes

Label group

Size (Point)

Width

Height

Output RData file

This analysis task includes samples (sample IDs) with the required molecular and/or clinical data from the .

You can download a source file of RData format here.

The analysis parameters and result files are also available in the Analysis History for future visit.

Clustering analysis : This tools performs both K-means clustering and Hierarchical clustering analysis for a given cohort using gene expression profiles, with cluster groups visualized using t-SNE method.

Help

Select a cohort

Select a cohort for analysis (Required)

Options for plotting

Genes

k cluster

Width

Height

Output RData file

This analysis task includes samples (sample IDs) with the required molecular and/or clinical data from the .

You can download a source file of RData format here.

The analysis parameters and result files are also available in the Analysis History for future visit.